Gardens4Science

References

When using this tool, please cite:

1. Bratzel, F., Heller, S., Cyrannek, N., Paule, J., Leme, E.M.C., Loreth, A., Nowotny, A., Kiefer, M., Till, W., Barfuss, M.H.J., Lexer, C., Koch, M.A., Zizka, G. (2020). The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae. BMC Plant Biologie 20:111. doi: 10.1186/s12870-020-2326-5

Literature used

1. Li M, Wunder J, Bissoli G, Scarponi E, Gazzani S, Barbaro E, et al. (2008) Development of COS genes as universally amplifiable markers for phylogenetic reconstructions of closely related plant species. Cladistics 24:727–745.
2. Leme EMC, Heller S, Zizka G, Halbritter H. (2017) New circumscription of Cryptanthus and new cryptanthoid genera and subgenera (Bromeliaceae: Bromelioideae) based on neglected morphological traits and molecular phylogeny. Phytotaxa 318(1):1–88.
3. Schulte K, Horres R, Zizka G. (2005) Molecular phylogeny of Bromelioideae and its implications on biogeography and the evolution of CAM in the family (Poales, Bromeliaceae). Senckenbergiana biologica 85(1):113–125.
4. Altschul, S.F., Gish, W., Miller, W., Myers, E.W. & Lipman, D.J. (1990) "Basic local alignment search tool." J. Mol. Biol. 215:403–410.
5. Ye J., McGinnis S, & Madden T.L. (2006) "BLAST: improvements for better sequence analysis." Nucleic Acids Res. 34:W6-W9.
6. Altschul, S.F. & Gish, W. (1996) "Local alignment statistics." Meth. Enzymol. 266:460–480.
7. Camacho C., Coulouris G., Avagyan V., Ma N., Papadopoulos J., Bealer K., & Madden T.L. (2008) "BLAST+: architecture and applications." BMC Bioinformatics 10:421.
8. Junier T. and Zdobnov, E.M. (2010) The Newick Utilities: High-throughput Phylogenetic tree Processing in the UNIX Shell. Bioinformatics 26:1669–1670. doi:10.1093/bioinformatics/btq243